Stem-loop csi-MIR477a

Accession

MI0016718

Description

Citrus sinensis csi-MIR477a precursor miRNA

Literature search

2 open access papers mention csi-MIR477a
(9 sentences)

Sequence

aaaauggagaagcuuccaACCUCCCUCGAAGGCUUCCAAuauaccaugcuuccucaaauuggccuuguaagcaugggaauguuGGAAACCCUAGGGGGAGGUCGaaagcuuaugacuccauuuaaucaguucuguacgug
.((((((((((((((.(.(((((((((...((.(((((((((.((((((((((.......))......))))))))..))))))))).))...))))))))).).))))))....)))))))).................

Structure

----------------a        ----      c a         GAA  C         -a        ------  uc 
                 aaauggag    aagcuu c ACCUCCCUC   GG UUCCAAuau  ccaugcuu      cc  a
                 ||||||||    |||||| | |||||||||   || |||||||||  ||||||||      ||  a
                 uuuaccuc    uucgaa G UGGAGGGGG   CC AAGGuugua  gguacgaa      gg  a
gugcaugucuugacuaa        agua      a C         AUC  A         ag        uguucc  uu 

Annotation confidence Not enough data

Genome context

chr7: 15360858-15360997 [-]

Mature csi-miR477a-5p

• Accession: MIMAT0018475
• Description: Citrus sinensis csi-miR477a-5p mature miRNA
• Sequence: 19 - ACCUCCCUCGAAGGCUUCCAA - 39
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR477a-3p

• Accession: MIMAT0037409
• Description: Citrus sinensis csi-miR477a-3p mature miRNA
• Sequence: 84 - GGAAACCCUAGGGGGAGGUCG - 104
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113