Stem-loop csi-MIR172a

Accession

MI0013302

Description

Citrus sinensis csi-MIR172a precursor miRNA

Literature search

5 open access papers mention csi-MIR172a
(17 sentences)

Sequence

gucaccuuaaaacagucguugcucgcuguaGCAGCGUCCUCAAGAUUCACAugcagucuaaaggcaaaagcagcaauuuuucuucauuuuugcuugccuugguuuuugucagugAGAAUCUUGAUGAUGCUGCAacggcgauuaaugacuagcuaccaacaa
.............((((((((.(((((((.((((((((.(((((((((.(((((((....((((((..(((((.(((........))).))))))))))).....))))..))).))))))))).)))))))).))))))).))))))))............

Structure

gucaccuuaaaac        c       a        C         A   --    -ucua      aa     c   uuu 
             agucguug ucgcugu GCAGCGUC UCAAGAUUC CAu  gcag     aaggca  agcag aau   u
             |||||||| ||||||| |||||||| ||||||||| |||  ||||     ||||||  ||||| |||    
             ucaguaau agcggca CGUCGUAG AGUUCUAAG gug  uguu     uuccgu  ucguu uua   c
-aacaaccaucga        u       A        U         A   ac    uuugg      --     u   cuu 

Annotation confidence Not enough data

Genome context

chr1: 27309962-27310123 [-]

Mature csi-miR172a-5p

• Accession: MIMAT0017387
• Description: Citrus sinensis csi-miR172a-5p mature miRNA
• Sequence: 31 - GCAGCGUCCUCAAGAUUCACA - 51
• Evidence: experimental ; Illumina [2-3]

Mature csi-miR172a-3p

• Accession: MIMAT0014076
• Description: Citrus sinensis csi-miR172a-3p mature miRNA
• Sequence: 115 - AGAAUCUUGAUGAUGCUGCA - 134
• Evidence: experimental ; Northern [1], Illumina [2-3]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685


2. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


3. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113