Stem-loop csi-MIR167a

Accession

MI0016740

Description

Citrus sinensis csi-MIR167a precursor miRNA

Literature search

6 open access papers mention csi-MIR167a
(8 sentences)

Sequence

gcacuaguaguaguUGAAGCUGCCAGCAUGAUCUGaacuuuccuugaccuccaucucuagggaaaggccAGAUCAUCUGGCAGUUUCACCuauugaugguagc
((((((.((((((.((((((((((((.((((((((..((((((((((........)).))))))))..)))))))))))))))))))).)))))).)))).))

Structure

  -    g      u            C        aa        -  ccu 
gc acua uaguag UGAAGCUGCCAG AUGAUCUG  cuuuccuu ga   c
|| |||| |||||| |||||||||||| ||||||||  |||||||| ||    
cg uggu guuauC ACUUUGACGGUC UACUAGAc  gaaaggga cu   c
  a    a      C            -        cg        u  cua 

Annotation confidence Not enough data

Genome context

chr3: 14951537-14951639 [+]

Mature csi-miR167a-5p

• Accession: MIMAT0018498
• Description: Citrus sinensis csi-miR167a-5p mature miRNA
• Sequence: 15 - UGAAGCUGCCAGCAUGAUCUG - 35
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR167a-3p

• Accession: MIMAT0037417
• Description: Citrus sinensis csi-miR167a-3p mature miRNA
• Sequence: 70 - AGAUCAUCUGGCAGUUUCACC - 90
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113