Stem-loop csi-MIR3954b

Accession

MI0039686

Description

Citrus sinensis csi-MIR3954b precursor miRNA

Sequence

uauuauuuugcuuugguuuggucuguuuacaaagugagaaaaucacuuucguuguucguuguuagaaaaaaauaugaucaauuauauuuguUUGGACAGAGAAAUCACGGUCAugagaugaguuuucuaaucuguacuguaaucuguauacggugauggugaauauugacgauggauucucuuucuACCGUGUUUCUCUGCCCAAUCagauauauuugaucuucauuccauuucugu
.............(((..(((.......(((((((((.....))))))).))..(((.......)))........((((((.((((((((.((((.((((((((.((((((...((((.(((..(((..(((..(((((((.......)))))))..))).............)))..))))))).)))))))))))))).)))).)))))))).)))))).)))..))).......

Structure

uauuauuuugcuu   uu   ucuguuuacaaagugagaaaaucacuuucguuguucguuguuagaaaaaaauau      u        u    A        U      CAu    u   uu   -----------ua   ug       au 
             ugg  ugg                                                      gaucaa uauauuug UUGG CAGAGAAA CACGGU   gaga gag  uuc             auc  uacugua  c
             |||  |||                                                      |||||| |||||||| |||| |||||||| ||||||   |||| |||  |||             |||  |||||||  u
             acc  acu                                                      cuaguu auauagaC AACC GUCUCUUU GUGCCA   cuuu cuc  agg             ugg  guggcau  g
------ugucuuu   uu   -----------------------------------------------------u      u        U    C        -      --u    -   uu   uagcaguuauaag   ua       au 

Annotation confidence Not enough data

Genome context

chr9: 5824724-5824960 [-]

Mature csi-miR3954b-5p

• Accession: MIMAT0048963
• Description: Citrus sinensis csi-miR3954b-5p mature miRNA
• Sequence: 92 - UUGGACAGAGAAAUCACGGUCA - 113
• Evidence: experimental ; Illumina [1]

Mature csi-miR3954b-3p

• Accession: MIMAT0048964
• Description: Citrus sinensis csi-miR3954b-3p mature miRNA
• Sequence: 187 - ACCGUGUUUCUCUGCCCAAUC - 207
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113