Stem-loop csi-MIR398b

Accession

MI0039668

Description

Citrus sinensis csi-MIR398b precursor miRNA

Literature search

3 open access papers mention csi-MIR398b
(8 sentences)

Sequence

357138 reads, 10592.0 reads per million, 16 experiments

gagaagucCCGCAGGGGCGACAUGAGAUCacaugcaacgcauugccuaaugccuauacaugugguguggugggaguguuuguguuuaugUGUGUUCUCAGGUCGCCCCUGugggauuucuuc
(((((((((((((((((((((.(((((.((((((.((((((..((((..((((.((((.....))))))))..)).)).))))))..)))))).))))).))))))))))))))))))))).

Structure

-                     A     U      -c      uu  -  aa    u    a 
 gagaagucCCGCAGGGGCGAC UGAGA Cacaug  aacgca  gc cu  ugcc auac u
 ||||||||||||||||||||| ||||| ||||||  ||||||  || ||  |||| |||| g
 uucuuuaggguGUCCCCGCUG ACUCU GUGUgu  uugugu  ug ga  gugg ugug u
c                     G     U      au      -u  u  gg    -    g 

Annotation confidence Medium

Genome context

chr2: 28957195-28957316 [+]

Mature csi-miR398b-5p

• Accession: MIMAT0057190
• Description: Citrus sinensis csi-miR398b-5p mature miRNA
• Sequence: 9 - CCGCAGGGGCGACAUGAGAUC - 29
• Evidence: experimental ; unknown

Mature csi-miR398b-3p

• Accession: MIMAT0048932
• Description: Citrus sinensis csi-miR398b-3p mature miRNA
• Sequence: 90 - UGUGUUCUCAGGUCGCCCCUG - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113