Stem-loop csi-MIR535e

Accession

MI0039709

Description

Citrus sinensis csi-MIR535e precursor miRNA

Literature search

2 open access papers mention csi-MIR535e
(5 sentences)

Sequence

527802 reads, 9514.0 reads per million, 16 experiments

caacuuuguuUGACAAUGAGAGAGAGCACACccgucagcauucgugcaaauggcaaggcugucuacuagcUUGCUCUCUACCAUUGUCAUAcga
.....((((.((((((((..(((((((....((((..(((....)))..))))..((((((.....)))))))))))))..)))))))).))))

Structure

caacu    u        AG       ACACccgucagcauucgugcaaauggca      u 
     uugu UGACAAUG  AGAGAGC                            aggcug c
     |||| ||||||||  |||||||                            |||||| u
     agcA ACUGUUAC  UCUCUCG                            UUcgau a
-----    U        CA       ----------------------------      c 

Annotation confidence High

Genome context

chr2: 14823918-14824011 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR535e

Mature csi-miR535e-5p

• Accession: MIMAT0049000
• Description: Citrus sinensis csi-miR535e-5p mature miRNA
• Sequence: 11 - UGACAAUGAGAGAGAGCACAC - 31
• Evidence: experimental ; Illumina [1]

Mature csi-miR535e-3p

• Accession: MIMAT0057194
• Description: Citrus sinensis csi-miR535e-3p mature miRNA
• Sequence: 71 - UUGCUCUCUACCAUUGUCAUA - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113