Stem-loop csi-MIR169j

Accession

MI0039645

Description

Citrus sinensis csi-MIR169j precursor miRNA

Literature search

5 open access papers mention csi-MIR169j
(12 sentences)

Sequence

uucuuacaugaagauaagaguaacguuuguUAGCCAAGGAUGACUUGCCUgcggcugucaauaucauuagguuucaagcaugaagccuuuuguuuggucgccagggagucuccuuggcuaaucugacagccucuuuucuuucaugcaaaaccu
......((((((((.(((((....(((.((((((((((((.(((((.((((((((((.......((..((((((((....))))))))..))..)))))).)))))))))))))))))))))..)))...))))).)).))))))........

Structure

--uucuua      -  u     uaac   -u            U     G    -      ucaauau  uu        a 
        caugaa ga aagag    guu  guUAGCCAAGGA GACUU CCUg cggcug       ca  agguuuca g
        |||||| || |||||    |||  |||||||||||| ||||| |||| ||||||       ||  ||||||||  
        guacuu cu uucuc    cag  uaaucgguuccu cugag ggac gcuggu       gu  uccgaagu c
uccaaaac      u  u     -cga   uc            -     -    c      -----uu  uu        a 

Annotation confidence Not enough data

Genome context

chr2: 27132069-27132221 [+]

Mature csi-miR169j-5p

• Accession: MIMAT0048899
• Description: Citrus sinensis csi-miR169j-5p mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCU - 50
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113