Accession
MI0013305
Description
Citrus sinensis
csi-MIR398a precursor miRNA
Literature search
3 open access papers mention csi-MIR398a
(8 sentences)
(8 sentences)
Sequence
2517
reads,
83.0
reads per million, 16 experiments
caacagaugugaaaccccagaGGAGUGAACCUGAGAACAGAGGguggcguuggcuuaaauuugauuugcauugcugcugccugcuccugccauacauuaaaucaaaaagauuguauguggccaacgcaccuUGUGUUCUCAGGUCACCCCUuugggaauucaauugucaaucagcacgugucaucaaguuacucaauugcucuaacauucgcugcuucugauuca
.........((((..((((((((.((((.((((((((((.((((((.((((((((............(((..((....)).))).........((((..((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..))))...((((..((((..((((.....(((.........)))...))))..))))....))))...
.........((((..((((((((.((((.((((((((((.((((((.((((((((............(((..((....)).))).........((((..((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..))))...((((..((((..((((.....(((.........)))...))))..))))....))))...
Structure
------------------------------------------------------caacagaug ac A A G g uaaauuugauuugcauugcugcugccugcu
ugaa cccagaGG GUGA CCUGAGAACA AGGgug cguuggcu c
|||| |||||||| |||| |||||||||| |||||| |||||||| c
acuu ggguuUCC CACU GGACUCUUGU Uuccac gcaaccgg u
acuuagucuucgucgcuuacaaucucguuaacucauugaacuacugugcacgacuaacuguua aa C - G - uguauguuagaaaaacuaaauuacauaccg
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr7: 1333347-1333571 [+]
Database links
Mature csi-miR398a-5p
| Accession | MIMAT0037372 |
| Description | Citrus sinensis csi-miR398a-5p mature miRNA |
| Sequence | 22 - GGAGUGAACCUGAGAACAGAGG - 43 |
| Evidence |
experimental
Illumina [2] |
Mature csi-miR398a-3p
| Accession | MIMAT0014079 |
| Description | Citrus sinensis csi-miR398a-3p mature miRNA |
| Sequence | 132 - UGUGUUCUCAGGUCACCCCU - 151 |
| Evidence |
experimental
Northern [1], Illumina [2] |
References
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