Stem-loop csi-MIR171a

Accession

MI0016699

Description

Citrus sinensis csi-MIR171a precursor miRNA

Literature search

3 open access papers mention csi-MIR171a
(3 sentences)

Sequence

898 reads, 53.0 reads per million, 16 experiments

uacaacgGGAUAUUGGUGCGGUUCAAUAagaaaacggugcucaauacuuuuugagcuccgcuuuuugaUUGAGCCGUGCCAAUAUCACgugccacu
....(((.(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).))))))))))))))))))).)))......

Structure

--uaca   G                   A     a   u      ua 
      acg GAUAUUGGUGCGGUUCAAU agaaa cgg gcucaa  c
      ||| ||||||||||||||||||| ||||| ||| ||||||   
      ugC CUAUAACCGUGCCGAGUUa uuuuu gcc cgaguu  u
ucaccg   A                   g     c   u      uu 

Annotation confidence Medium

Genome context

chr2: 18395485-18395580 [+]

Mature csi-miR171a-5p

• Accession: MIMAT0057168
• Description: Citrus sinensis csi-miR171a-5p mature miRNA
• Sequence: 8 - GGAUAUUGGUGCGGUUCAAUA - 28
• Evidence: experimental ; unknown

Mature csi-miR171a-3p

• Accession: MIMAT0018456
• Description: Citrus sinensis csi-miR171a-3p mature miRNA
• Sequence: 69 - UUGAGCCGUGCCAAUAUCAC - 88
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113