Stem-loop csi-MIR12105

Accession

MI0039687

Description

Citrus sinensis csi-MIR12105 precursor miRNA

Sequence

106175 reads, 13419.0 reads per million, 16 experiments

augcaagcuuUUUCUUGAGACAAAACAUGCAUCgaaccuucuugucagguaccacacccguucaucuaaaacaggcucccaccucuuaauuaauuagaaguuuuuuauuaucagacgugagggcuUGUUUUGGGUGAAACGGGUGUUgcacagggcuugauguuucguugcauguuuuguagagaaacagcuuuuguugcuu
..(((((((.((((((...((((((((((((.((((.(.((..(((..((.(.(((((((((((((((((((((((((.(((.(((....((((.(((....))).))))..))).))).)))))))))))))))).))))))))).).))..)))..)).).)))).)))))))))))).)))))).)))).....)))..

Structure

au   -----    u      GAG            U    c u  uu   ag  a c         -                c   c   uaau    u   a 
  gca     agcu UUUCUU   ACAAAACAUGCA Cgaa c uc  guc  gu c acacccguu caucuaaaacaggcuc cac ucu    uaau aga g
  |||     |||| ||||||   |||||||||||| |||| | ||  |||  || | ||||||||| |||||||||||||||| ||| |||    |||| |||  
  cgu     ucga aaagag   uguuuuguacgu gcuu g ag  cgg  ca g UGUGGGCAA GUGGGUUUUGUucggg gug aga    auua uuu u
uu   uguuu    c      --a            u    u u  uu   ga  c U         A                a   c   --cu    u   u 

Annotation confidence Low

Genome context

chr3: 13421634-13421835 [-]

Mature csi-miR12105-5p

• Accession: MIMAT0048965
• Description: Citrus sinensis csi-miR12105-5p mature miRNA
• Sequence: 11 - UUUCUUGAGACAAAACAUGCAUC - 33
• Evidence: experimental ; Illumina [1]

Mature csi-miR12105-3p

• Accession: MIMAT0048966
• Description: Citrus sinensis csi-miR12105-3p mature miRNA
• Sequence: 126 - UGUUUUGGGUGAAACGGGUGUU - 147
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113