Stem-loop csi-MIR169e

Accession

MI0039640

Description

Citrus sinensis csi-MIR169e precursor miRNA

Literature search

5 open access papers mention csi-MIR169e
(12 sentences)

Sequence

gucuuacaugaauauaauaucauuguuuguUAGCCAAGGAUGACUUGCCUgcaccuugauugcaagacgaggguuucaaguggcuggaagccucucuuguuugguugcCAGGCAGUCUCCUUGGCUAAGucacaggcucuuaucuuucaugcuaggccu
((((..((((((.((((.....((((...(((((((((((.((((.(((((((((......((((((.((((.(((((......))))).))))))))))..)).)).))))))))))))))))))))...))))....))))..))))))..))))..

Structure

--    ua      -u    uauca    uug           U    U     -  -  uugauu      c    g     ag 
  gucu  caugaa  auaa     uugu   uUAGCCAAGGA GACU GCCUg ca cc      gcaaga gagg uuuca  u
  ||||  ||||||  ||||     ||||   ||||||||||| |||| ||||| || ||      |||||| |||| |||||   
  cgga  guacuu  uauu     gaca   AAUCGGUUCCU CUGA CGGAC gu gg      uguucu cucc aaggu  g
uc    uc      uc    -cucg    cuG           -    -     c  u  ----uu      -    g     cg 

Annotation confidence Not enough data

Genome context

chr2: 11051619-11051777 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR169e

Mature csi-miR169e-5p

• Accession: MIMAT0048893
• Description: Citrus sinensis csi-miR169e-5p mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCU - 50
• Evidence: experimental ; Illumina [1]

Mature csi-miR169e-3p

• Accession: MIMAT0048894
• Description: Citrus sinensis csi-miR169e-3p mature miRNA
• Sequence: 109 - CAGGCAGUCUCCUUGGCUAAG - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113