Stem-loop csi-MIR396e

Accession

MI0039666

Description

Citrus sinensis csi-MIR396e precursor miRNA

Literature search

1 open access papers mention csi-MIR396e
(2 sentences)

Sequence

ggaaauuaauuaaaggucuuuugcaugcuuUUCCACGGCUUUCUUGAACUuaauuaguacgguuaauuuuuuugugcuauuaacaagcaauuaauaugcaaaucuuuaaucagugcaaaGCUCAAGAAUGCCGUGGGAAAacaugaaagguuuuugucgugccaccaccc
((........((((((.(((((.((((.(((((((((((.(((((((.(((.....((((((((((....((((((.((((((.......))))))))))))...)))))).)))).))).))))))).))))))))))).)))))))))))))))........))....

Structure

----  aaauuaau      u     g    c           U       A   aauua    -      uuuu      c      ca 
    gg        uaaagg cuuuu caug uuUUCCACGGC UUCUUGA CUu     guac gguuaa    uuugug uauuaa  a
    ||        |||||| ||||| |||| ||||||||||| ||||||| |||     |||| ||||||    |||||| ||||||  g
    cc        guuuuu ggaaa guac AAAGGGUGCCG AAGAACU Gaa     cgug cuaauu    aaacgu auaauu  c
ccca  accgugcu      -     -    a           U       C   ----a    a      -ucu      -      aa 

Annotation confidence Not enough data

Genome context

chr7: 10780729-10780898 [-]

Mature csi-miR396e-5p

• Accession: MIMAT0048928
• Description: Citrus sinensis csi-miR396e-5p mature miRNA
• Sequence: 31 - UUCCACGGCUUUCUUGAACU - 50
• Evidence: experimental ; Illumina [1]

Mature csi-miR396e-3p

• Accession: MIMAT0048929
• Description: Citrus sinensis csi-miR396e-3p mature miRNA
• Sequence: 120 - GCUCAAGAAUGCCGUGGGAAA - 140
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113