Stem-loop csi-MIR156f

Accession

MI0039619

Description

Citrus sinensis csi-MIR156f precursor miRNA

Literature search

7 open access papers mention csi-MIR156f
(36 sentences)

Sequence

gguaacuugcuuaacuaugaacuugguucgAUGACAGAAGAGAGAGAGUACaacccgccauuagcuaaagagucuuugcuuuuguugggaguguGCUCUCUCUUCUCCUGUCAUUGaguuauuuuuauuugucauuuaauuauuug
.............((.(((((..((((((((((((((.((((((((((((((.((((.((..(((.((((...)))))))..)).))))..))))))))))).))).))))))))))))))..)))))..))..............

Structure

-gguaacuugcuua  -u     cu              A   -           -a    c  uu   u    a 
              ac  augaa  ugguucgAUGACAG AGA GAGAGAGUACa  cccg ca  agc aaag  
              ||  |||||  |||||||||||||| ||| |||||||||||  |||| ||  ||| |||| g
              ug  uauuu  auugaGUUACUGUC UCU CUCUCUCGugu  gggu gu  ucg uuuc  
guuuauuaauuuac  uu     uu              C   U           ga    u  uu   -    u 

Annotation confidence Not enough data

Genome context

chr4: 5738174-5738319 [-]

Mature csi-miR156f-5p

• Accession: MIMAT0048857
• Description: Citrus sinensis csi-miR156f-5p mature miRNA
• Sequence: 31 - AUGACAGAAGAGAGAGAGUAC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR156f-3p

• Accession: MIMAT0048858
• Description: Citrus sinensis csi-miR156f-3p mature miRNA
• Sequence: 95 - GCUCUCUCUUCUCCUGUCAUUG - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113