miRBase entry: csi-MIR3627c

Stem-loop csi-MIR3627c

Accession

MI0039682

Description

Citrus sinensis csi-MIR3627c precursor miRNA

Sequence

aauuaaauauagaaaguuggggcacuuauaUCGCAGGGGAGAUGGGACCAACugcagccgcuagguagcagccggugccauccuccugcgauaugagaacccuccaacuuacucuuguccaaa
..........((.(((((((((..(((((((((((((((.(((((.(((..((((.(((....))).))))..))).))))))))))))))))))))....))))))))).))..........

Structure

aauuaaauau  a         --ca               A     G   AA    a   g 
          ag aaguugggg    cuuauaUCGCAGGGG GAUGG ACC  Cugc gcc c
          || |||||||||    ||||||||||||||| ||||| |||  |||| |||  
          uc uucaaccuc    gaguauagcguccuc cuacc ugg  gacg ugg u
aaaccuguuc  a         ccaa               -     g   cc    a   a

Annotation confidence Not enough data

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Genome context

chr6: 19939025-19939147 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR3627c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature csi-miR3627c-5p

Accession	MIMAT0048956
Description	Citrus sinensis csi-miR3627c-5p mature miRNA
Sequence	31 - UCGCAGGGGAGAUGGGACCAAC - 52
Evidence	experimental Illumina [1]

References

PubMed ID: 28054378
MicroRNA annotation of plant genomes - Do it right or not at all
"Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
Bioessays (2017) 39:1600113