Stem-loop csi-MIR395b

Accession

MI0039663

Description

Citrus sinensis csi-MIR395b precursor miRNA

Literature search

4 open access papers mention csi-MIR395b
(26 sentences)

Sequence

ugacugcacaugcaucagguguccccuagaGUUCCCCUGAACACUUCAUUGgggacuccuuuuaacccuaCUGAAGUGUUUGGGGGAACUCcuggagucauuugauauuacucaugagcgu
....(((.((((.((((((((.(.((..((((((((((((((((((((.(((((...........))))).))))))))))))))))))))..)).).))))))))......)))).))).

Structure

ugac   a    -----c        u c  ua                    U     acuc 
    ugc caug      aucaggug c cc  gaGUUCCCCUGAACACUUCA UGggg    c
    ||| ||||      |||||||| | ||  |||||||||||||||||||| |||||    u
    gcg guac      uaguuuac g gg  CUCAAGGGGGUUUGUGAAGU auccc    u
---u   a    ucauua        u a  uc                    C     aauu 

Annotation confidence Not enough data

Genome context

chr7: 2081126-2081246 [-]

Mature csi-miR395b-5p

• Accession: MIMAT0048924
• Description: Citrus sinensis csi-miR395b-5p mature miRNA
• Sequence: 31 - GUUCCCCUGAACACUUCAUUG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR395b-3p

• Accession: MIMAT0048925
• Description: Citrus sinensis csi-miR395b-3p mature miRNA
• Sequence: 71 - CUGAAGUGUUUGGGGGAACUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113