Stem-loop csi-MIR12111

Accession

MI0039698

Description

Citrus sinensis csi-MIR12111 precursor miRNA

Sequence

1109 reads, 87.0 reads per million, 16 experiments

ucucuuaaacacauggaagagaGAAAAACUUAGGUGGGAUAGUGUGAccacgucaaucauaauggaaaaacuagguuguucuauccuacuaugccuacacgaugacgugguggGACUGUCCCAUCUAAGUUUUUCUCuuuagaaggauca
.................((((((((((((((((((((((((((.(.(((((((((.((.....((......((((.........)))).....)).....))))))))))).).))))))))))))))))))))))))))..........

Structure

ucucuuaaacacaugga                          G G         a  auaau  aaaaac    uug 
                 agagaGAAAAACUUAGGUGGGAUAGU U Accacguca uc     gg      uagg   u
                 |||||||||||||||||||||||||| | ||||||||| ||     ||      ||||   u
                 uuuCUCUUUUUGAAUCUACCCUGUCA g uggugcagu ag     cc      aucc   c
-------acuaggaaga                          G g         -  cacau  -guauc    uau 

Annotation confidence High

Genome context

chr5: 8697594-8697743 [-]

Mature csi-miR12111-5p

• Accession: MIMAT0048983
• Description: Citrus sinensis csi-miR12111-5p mature miRNA
• Sequence: 23 - GAAAAACUUAGGUGGGAUAGUGUGA - 47
• Evidence: experimental ; Illumina [1]

Mature csi-miR12111-3p

• Accession: MIMAT0048984
• Description: Citrus sinensis csi-miR12111-3p mature miRNA
• Sequence: 114 - GACUGUCCCAUCUAAGUUUUUCUC - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113