Stem-loop csi-MIR162

Accession

MI0013314

Description

Citrus sinensis csi-MIR162 precursor miRNA

Literature search

1 open access papers mention csi-MIR162
(8 sentences)

Sequence

aaacuguuuacacugaucugugcugcugauaaaucuuaauuuuuuuuuugaauuuuuauuuaacagaaaauagagagagugaagucacUGGAGGCAGCGGUUCAUCGAUCacuuugugcaaauuuuguugugaaaaauaacacaaaauacaugaaucgaUCGAUAAACCUCUGCAUCCAGcgcucacuccaacucuauuc
..........(((......)))...(((.(((((...(((((.......)))))...))))).)))..(((((((.((((((.(.(.(((((.((((.((((.(((((((..((((((...(((((((.((........))))))))).))))))..))))))).)))).)))).))))).))))))))...))))))).

Structure

aaacuguuuacacugaucugugcugcugauaaaucuuaauuuuuuuuuugaauuuuuauuuaacagaa       --a      a u a     G    C    C       ac      caa       u  gaa 
                                                                    aauagag   gaguga g c cUGGA GCAG GGUU AUCGAUC  uuugug   auuuugu gu   a
                                                                    |||||||   |||||| | | ||||| |||| |||| |||||||  ||||||   ||||||| ||    
                                                                    uuaucuc   cucacu c g GACCU CGUC CCAA UAGCUag  aaguac   uaaaaca ca   a
-------------------------------------------------------------------c       aac      - - c     A    U    A       cu      --a       -  aua 

Annotation confidence Not enough data

Genome context

JH999183.1: 24505-24704 [+]

Mature csi-miR162-5p

• Accession: MIMAT0017388
• Description: Citrus sinensis csi-miR162-5p mature miRNA
• Sequence: 89 - UGGAGGCAGCGGUUCAUCGAUC - 110
• Evidence: experimental ; Illumina [2-3]

Mature csi-miR162-3p

• Accession: MIMAT0014088
• Description: Citrus sinensis csi-miR162-3p mature miRNA
• Sequence: 160 - UCGAUAAACCUCUGCAUCCAG - 180
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685


2. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


3. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113