Stem-loop csi-MIR166h

Accession

MI0039631

Description

Citrus sinensis csi-MIR166h precursor miRNA

Literature search

7 open access papers mention csi-MIR166h
(12 sentences)

Sequence

354 reads, 12.0 reads per million, 15 experiments

guuggaguugagaGGAAUGGCGGCUGGUUCAAggcuucaaaagagaguuucuuaagaaauaagaaacaauuauuaaucucucucuaaagauagcuUUGGACCAGGCUUCCUUCCUCUCaaaauuaa
.......((((((((((.((.(((((((((((((((((...(((((((((((((.....)))))))).............)))))...)).)))))))))))).))).))))))))))))......

Structure

guuggag          U  C   -            -  aaa     -------------        a 
       uugagaGGAA GG GGC UGGUUCAAggcu uc   agaga             guuucuua g
       |||||||||| || ||| |||||||||||| ||   |||||             |||||||| a
       aaCUCUCCUU CC UCG ACCAGGUUucga ag   ucucu             caaagaau a
-aauuaa          -  U   G            u  aaa     cucuaauuauuaa        a 

Annotation confidence High

Genome context

JH999128.1: 611054-611179 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR166h

Mature csi-miR166h-5p

• Accession: MIMAT0057177
• Description: Citrus sinensis csi-miR166h-5p mature miRNA
• Sequence: 14 - GGAAUGGCGGCUGGUUCAA - 32
• Evidence: experimental ; unknown

Mature csi-miR166h-3p

• Accession: MIMAT0048880
• Description: Citrus sinensis csi-miR166h-3p mature miRNA
• Sequence: 96 - UUGGACCAGGCUUCCUUCCUCUC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113