Stem-loop csi-MIR166b

Accession

MI0039627

Description

Citrus sinensis csi-MIR166b precursor miRNA

Literature search

7 open access papers mention csi-MIR166b
(17 sentences)

Sequence

augguugaugGGAAUGUUGUUUGGCUCGAGGGucaucuagguuuucaaaauuuucucggacuuccuaauuucuuacuuuuauuuuucccggaaauuuuuuuuguuauuugccuaugugaUCUCGGACCAGGCUUCAUUCCcgucaaccga
..((((((((((((((..((((((.((((((.((((.(((((...(((((.((((.(((............................)))))))....)))))......))))).)))))))))).))))))..))))))))))))))..

Structure

au              UU      C      G    c     ---uuu     ---u    u   acuuccuaauuuc 
  gguugaugGGAAUG  GUUUGG UCGAGG ucau uaggu      caaaa    uuuc cgg             u
  ||||||||||||||  |||||| |||||| |||| |||||      |||||    |||| |||              
  ccaacugcCCUUAC  CGGACC GGCUCU agug auccg      guuuu    aaag gcc             u
ag              UU      A      -    u     uuuauu     uuuu    -   cuuuuuauuuuca 

Annotation confidence Not enough data

Genome context

chr3: 4882349-4882498 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR166b

Mature csi-miR166b-5p

• Accession: MIMAT0048872
• Description: Citrus sinensis csi-miR166b-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUUUGGCUCGAGGG - 32
• Evidence: experimental ; Illumina [1]

Mature csi-miR166b-3p

• Accession: MIMAT0048873
• Description: Citrus sinensis csi-miR166b-3p mature miRNA
• Sequence: 120 - UCUCGGACCAGGCUUCAUUCC - 140
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113