Stem-loop csi-MIR827

Accession

MI0016727

Description

Citrus sinensis csi-MIR827 precursor miRNA

Literature search

4 open access papers mention csi-MIR827
(5 sentences)

Sequence

4771 reads, 378.0 reads per million, 16 experiments

gCUUGUUGAUUGUCAUCUAAUCAuuuucuuuuucauccuagaauuugaaugauuauauggUUAGAUGACCAUCAACAAACAUauucaugguauugcaugc
..((((((((.(((((((((((((.......((((..........)))).......))))))))))))).)))))))).......((((......)))).

Structure

--------------------gC        U             uuucuuu    uccu 
                      UUGUUGAU GUCAUCUAAUCAu       uuca    a
                      |||||||| |||||||||||||       ||||     
                      AACAACUA CAGUAGAUUggua       aagu    g
cguacguuaugguacuuaUACA        C             uauuagu    uuaa 

Annotation confidence High

Genome context

JH999145.1: 323612-323711 [+]

Mature csi-miR827-5p

• Accession: MIMAT0057170
• Description: Citrus sinensis csi-miR827-5p mature miRNA
• Sequence: 2 - CUUGUUGAUUGUCAUCUAAUCA - 23
• Evidence: experimental ; unknown

Mature csi-miR827-3p

• Accession: MIMAT0018485
• Description: Citrus sinensis csi-miR827-3p mature miRNA
• Sequence: 61 - UUAGAUGACCAUCAACAAACAU - 82
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113