Stem-loop csi-MIR1515b

Accession

MI0039684

Description

Citrus sinensis csi-MIR1515b precursor miRNA

Literature search

1 open access papers mention csi-MIR1515b
(1 sentences)

Sequence

ucgauuugcaUCAUUUUUGCGUGCAAUGAUCCcgaauuugcucucuuacucaacuuucuuuuuaauuuacaaauauucauguuuauugguuugaaaaauagaaaaaaaaauucuaauuuuuguuaacggggaucuggAUCAUUCACGCAAAAAUGAUUugacucgugaguuggc
.((((((((((((((((((((((.((((((((.((......(((((....(((.((((...(((((..(((........)))..)))))...))))..(((((.......)))))....))).....))))))).)))))))))))))))))))))).......))))))))..

Structure

-u        -------              C        c  auuugc     -uacu   ----------------------c    uuu     uu   aau 
  cgauuugc       aUCAUUUUUGCGUG AAUGAUCC ga      ucucu     caa                       uuuc   uuaau  aca   a
  ||||||||       |||||||||||||| |||||||| ||      |||||     |||                       ||||   |||||  |||    
  guugagug       UAGUAAAAACGCAC UUACUAgg cu      agggg     guu                       aaag   gguua  ugu   u
cg        cucaguU              -        u  ------     caauu   uuuaaucuuaaaaaaaaagauaa    uuu     uu   acu 

Annotation confidence Not enough data

Genome context

chr1: 22746989-22747162 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR1515b

Mature csi-miR1515b-5p

• Accession: MIMAT0048959
• Description: Citrus sinensis csi-miR1515b-5p mature miRNA
• Sequence: 11 - UCAUUUUUGCGUGCAAUGAUCC - 32
• Evidence: experimental ; Illumina [1]

Mature csi-miR1515b-3p

• Accession: MIMAT0048960
• Description: Citrus sinensis csi-miR1515b-3p mature miRNA
• Sequence: 138 - AUCAUUCACGCAAAAAUGAUU - 158
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113