Stem-loop csi-MIR166c

Accession

MI0016694

Description

Citrus sinensis csi-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

7 open access papers mention csi-MIR166c
(12 sentences)

Sequence

uuccuccucgaucauacaugaacgguugagGGGAAUGUUGUCUGGUUCGAGaucacucguggacgaauuaauuaauaacuuauugucuuuugaaugauuUCGGACCAGGCUUCAUUCCCcccaacucaguuuaauugc
..................((((((((((.((((((((..((((((((((((((((.(((.((((((................))))))..))).))))))))))))))))..)))))))).)))))..))))).....

Structure

uuccuccucgaucauaca     --     a        UU                c   -u      auuaauu 
                  ugaac  gguug gGGGAAUG  GUCUGGUUCGAGauca ucg  ggacga       a
                  |||||  ||||| ||||||||  |||||||||||||||| |||  ||||||        
                  auuug  ucaac cCCCUUAC  CGGACCAGGCUuuagu agu  ucuguu       a
-------------cguua     ac     c        UU                a   uu      auucaau 

Annotation confidence Not enough data

Genome context

chr5: 32146390-32146527 [+]

Mature csi-miR166c-3p

• Accession: MIMAT0018451
• Description: Citrus sinensis csi-miR166c-3p mature miRNA
• Sequence: 100 - UCGGACCAGGCUUCAUUCCC - 119
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR166c-5p

• Accession: MIMAT0037393
• Description: Citrus sinensis csi-miR166c-5p mature miRNA
• Sequence: 31 - GGGAAUGUUGUCUGGUUCGAG - 51
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113