Stem-loop csi-MIR169d

Accession

MI0039639

Description

Citrus sinensis csi-MIR169d precursor miRNA

Literature search

5 open access papers mention csi-MIR169d
(12 sentences)

Sequence

1321 reads, 48.0 reads per million, 15 experiments

gucuugcaugaagauaagaguaauuuuuguUAGCCAAGGAUGACUUGCCUGcggcuugcaauauaauuagguuucaagcuuugaagccuuuuguuugguugccAGGCAGUCUCCUUGGCUAAGcugacagcuucuucucuuucaugcuaaacc
.....(((((((((.((((((..((....(((((((((((.((((.((((((((((.((((.......(((((((((...))))))))).))))..))))).))))))))))))))))))))...))..)).)))).)).)))))))......

Structure

-gucuu       -  u    -  aa  uuug           U    U     -     -u    uauaauu         g 
      gcaugaa ga aaga gu  uu    uUAGCCAAGGA GACU GCCUG cggcu  gcaa       agguuucaa  
      ||||||| || |||| ||  ||    ||||||||||| |||| ||||| |||||  ||||       ||||||||| c
      cguacuu cu uucu cg  ag    AAUCGGUUCCU CUGA CGGAc guugg  uguu       uccgaaguu  
ccaaau       u  c    u  ac  -ucG           -    -     c     uu    ------u         u 

Annotation confidence High

Genome context

chr2: 11047192-11047344 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR169d

Mature csi-miR169d-5p

• Accession: MIMAT0048891
• Description: Citrus sinensis csi-miR169d-5p mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCUG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR169d-3p

• Accession: MIMAT0048892
• Description: Citrus sinensis csi-miR169d-3p mature miRNA
• Sequence: 104 - AGGCAGUCUCCUUGGCUAAG - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113