Stem-loop csi-MIR166d

Accession

MI0039628

Description

Citrus sinensis csi-MIR166d precursor miRNA

Literature search

7 open access papers mention csi-MIR166d
(18 sentences)

Sequence

6324468 reads, 156614.0 reads per million, 16 experiments

cuguucuuuuGAGGGGACUGUUGUCUGGuucaaggccaucaauuaauuguaacuuugauucaugugugugugucuguguguauauacauauauguucUCGGACCAGGCUUCAUUCCCCuuaauuacug
........(((((((((.((..(((((((((.(((..(((((............))))).((((((((((((((.....).))))))))))))).))).)))))))))..)).)))))))))......

Structure

cuguucuu         C  UU         a   ccaucaauuaauuguaacuuugauu             - u 
        uuGAGGGGA UG  GUCUGGuuc agg                         caugugugugugu c g
        ||||||||| ||  ||||||||| |||                         ||||||||||||| | u
        aauuCCCCU AC  CGGACCAGG Ucu                         guauauacauaua g g
--gucauu         U  UU         C   ------------------------u             u u 

Annotation confidence Medium

Genome context

JH999146.1: 206472-206599 [+]

Mature csi-miR166d-5p

• Accession: MIMAT0048874
• Description: Citrus sinensis csi-miR166d-5p mature miRNA
• Sequence: 11 - GAGGGGACUGUUGUCUGG - 28
• Evidence: experimental ; Illumina [1]

Mature csi-miR166d-3p

• Accession: MIMAT0048875
• Description: Citrus sinensis csi-miR166d-3p mature miRNA
• Sequence: 98 - UCGGACCAGGCUUCAUUCCCC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113