Stem-loop csi-MIR166d

Accession

MI0039628

Description

Citrus sinensis csi-MIR166d precursor miRNA

Literature search

7 open access papers mention csi-MIR166d
(18 sentences)

Sequence

cuguucuuuugaggggaCUGUUGUCUGGUUCAAGGccaucaauuaauuguaacuuugauucaugugugugugucuguguguauauacauauauguUCUCGGACCAGGCUUCAUUCCccuuaauuacug
........(((((((((.((..(((((((((.(((..(((((............))))).((((((((((((((.....).))))))))))))).))).)))))))))..)).)))))))))......

Structure

cuguucuu         C  UU         A   ccaucaauuaauuguaacuuugauu             - u 
        uugagggga UG  GUCUGGUUC AGG                         caugugugugugu c g
        ||||||||| ||  ||||||||| |||                         ||||||||||||| | u
        aauuccCCU AC  CGGACCAGG UCU                         guauauacauaua g g
--gucauu         U  UU         C   ------------------------u             u u 

Annotation confidence Not enough data

Genome context

JH999146.1: 206472-206599 [+]

Mature csi-miR166d-5p

• Accession: MIMAT0048874
• Description: Citrus sinensis csi-miR166d-5p mature miRNA
• Sequence: 18 - CUGUUGUCUGGUUCAAGG - 35
• Evidence: experimental ; Illumina [1]

Mature csi-miR166d-3p

• Accession: MIMAT0048875
• Description: Citrus sinensis csi-miR166d-3p mature miRNA
• Sequence: 96 - UCUCGGACCAGGCUUCAUUCC - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113