Stem-loop csi-MIR156j

Accession

MI0039703

Description

Citrus sinensis csi-MIR156j precursor miRNA

Literature search

7 open access papers mention csi-MIR156j
(36 sentences)

Sequence

2082 reads, 60.0 reads per million, 14 experiments

gugaaaggcugacacucAGCUGCUGACUCGUUGGUUCaagagcucaucaauggaaaauguagaaucaugauguguuucugAUCCAACGAAGCAGGAGCUGcguuuagucaug
......((((((.((.(((((.(((..(((((((.(((.((((.(((((.((.............))))))).)))).))).)))))))..))).))))).))))))))...

Structure

gugaaa      c  u     G   AC       U   a    u     a  gaaaa 
      ggcuga ac cAGCU CUG  UCGUUGG UCa gagc cauca ug     u
      |||||| || ||||| |||  ||||||| ||| |||| ||||| ||     g
      cugauu ug GUCGA GAC  AGCAACC Agu uuug guagu ac     u
---gua      -  c     G   GA       U   c    u     -  uaaga 

Annotation confidence High

Genome context

chr2: 10333819-10333930 [+]

Mature csi-miR156j-5p

• Accession: MIMAT0048991
• Description: Citrus sinensis csi-miR156j-5p mature miRNA
• Sequence: 18 - AGCUGCUGACUCGUUGGUUC - 37
• Evidence: experimental ; Illumina [1]

Mature csi-miR156j-3p

• Accession: MIMAT0048992
• Description: Citrus sinensis csi-miR156j-3p mature miRNA
• Sequence: 81 - AUCCAACGAAGCAGGAGCUG - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113