Stem-loop csi-MIR12108

Accession

MI0039694

Description

Citrus sinensis csi-MIR12108 precursor miRNA

Sequence

12992 reads, 1500.0 reads per million, 16 experiments

uaaauauauauguaaggauucucaugugcaGACGUUCGCACUUUUUAAAAUGCAgauuuauguuaguucaugcuaauuagcucaaauuuaacauucuuauucauguuaauuagcucaaaguuaacauuuucauaucugcAUUUUAAAACGUGCGGAUGUCUGCAcuaaagaaugauuauauauauguuucu
.((((((((((((((..(((((...((((((((((((((((.(((((((((((((((..(((((((.....((((((((((.......................))))))))))......)))))))......))))))))))))))).))))))))))))))))...)))))..))))))))))))))..

Structure

-u              gg     cau                U               ----uu       -uucau          ucaaauuuaa 
  aaauauauauguaa  auucu   gugcaGACGUUCGCAC UUUUAAAAUGCAgau      auguuag      gcuaauuagc          c
  ||||||||||||||  |||||   |||||||||||||||| |||||||||||||||      |||||||      ||||||||||          a
  uuuguauauauauu  uaaga   cACGUCUGUAGGCGUG AAAAUUUUAcgucua      uacaauu      cgauuaauug          u
uc              ag     aau                C               uacuuu       gaaacu          uacuuauucu 

Annotation confidence Medium

Genome context

JH999167.1: 85093-85283 [+]

Mature csi-miR12108-5p

• Accession: MIMAT0048975
• Description: Citrus sinensis csi-miR12108-5p mature miRNA
• Sequence: 31 - GACGUUCGCACUUUUUAAAAUGCA - 54
• Evidence: experimental ; Illumina [1]

Mature csi-miR12108-3p

• Accession: MIMAT0048976
• Description: Citrus sinensis csi-miR12108-3p mature miRNA
• Sequence: 140 - AUUUUAAAACGUGCGGAUGUCUGCA - 164
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113