Stem-loop csi-MIR477d

Accession

MI0039672

Description

Citrus sinensis csi-MIR477d precursor miRNA

Literature search

2 open access papers mention csi-MIR477d
(11 sentences)

Sequence

uugcucACUCUCCCUCAAGGGCUUCUGGcguuaauuaaugacaauuauuaaugcuugcagcugccugccaggccUGAGGCCGUUGGGGAGAGUGGacaaaag
(((.((((((((((.(((.((((((.(((....((((((((...)))))))).((.((((....)))).))))).)))))).))))))))))))).)))...

Structure

---   c          U   G      U   ---------------guua        c 
   uug ucACUCUCCC CAA GGCUUC GGc                   auuaauga  
   ||| |||||||||| ||| |||||| |||                   |||||||| a
   aac GGUGAGAGGG GUU CCGGAG ccg                   uaauuauu  
gaa   a          -   G      U   gaccguccgucgacguucg        a 

Annotation confidence Not enough data

Genome context

chr5: 1064087-1064188 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR477d

Mature csi-miR477d-5p

• Accession: MIMAT0048939
• Description: Citrus sinensis csi-miR477d-5p mature miRNA
• Sequence: 7 - ACUCUCCCUCAAGGGCUUCUGG - 28
• Evidence: experimental ; Illumina [1]

Mature csi-miR477d-3p

• Accession: MIMAT0048940
• Description: Citrus sinensis csi-miR477d-3p mature miRNA
• Sequence: 75 - UGAGGCCGUUGGGGAGAGUGG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113