Stem-loop ath-MIR2936

Accession

MI0013366

Description

Arabidopsis thaliana ath-MIR2936 precursor miRNA

Literature search

1 open access papers mention ath-MIR2936
(2 sentences)

Sequence

4514 reads, 34.0 reads per million, 167 experiments

ccauuuucgaaagcCUUGAGAGAGAGAACACAGACGauaccaacuuucuucaaucucguugccgcaguauaauuaucucauuccucggauauaucucuccuucugcggcggcgacaagaagcuacaagaauaaaaaGUCUGUUUUCUCUCUUUUCAAGAaaccacuuacuucgaaaaugg
(((((((((((...((((((((((((((.((((((........(((.((((....((((((((((((..............((....)).............))))))))))))...))))....)))........)))))).))))))).)))))))...........)))))))))))

Structure

           --------agc       -       C      Gauaccaa   ---u    aauc            uauaauuaucucau  c 
ccauuuucgaa           CUUGAGA GAGAGAA ACAGAC        cuu    cuuc    ucguugccgcag              uc u
|||||||||||           ||||||| ||||||| ||||||        |||    ||||    ||||||||||||              ||  
gguaaaagcuu           GAACUUU CUCUCUU UGUCUG        gaa    gaag    agcggcggcguc              ag c
           cauucaccaaA       U       U      aaaaauaa   cauc    -aac            -uuccucucuauau  g 

Annotation confidence Medium

Genome context

chr4: 1046804-1046983 [-]

Mature ath-miR2936-5p

• Accession: MIMAT0014140
• Description: Arabidopsis thaliana ath-miR2936-5p mature miRNA
• Sequence: 15 - CUUGAGAGAGAGAACACAGACG - 36
• Evidence: experimental ; 454 [1]

Mature ath-miR2936-3p

• Accession: MIMAT0053893
• Description: Arabidopsis thaliana ath-miR2936-3p mature miRNA
• Sequence: 137 - GUCUGUUUUCUCUCUUUUCAAGA - 159
• Evidence: experimental ; unknown

References

1. PubMed ID: 20042113
   MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
   Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
   BMC Genomics (2009) 10:643