Stem-loop ath-MIR2939

Accession

MI0013369

Description

Arabidopsis thaliana ath-MIR2939 precursor miRNA

Literature search

1 open access papers mention ath-MIR2939
(14 sentences)

Sequence

3914 reads, 42.0 reads per million, 108 experiments

guugucaccguuagucuuucacuacgAUGACUUAUUGUUGUGUUACCaaagaaaacauaaggcuuguguugucuuuggUAACGCACAACACUAAGCCAUcgcaguuacagacaacaaaauggcac
..(((((..(((.((((...(((.(((((.((((.(((((((((((((((((.(((((((...))))))).)))))))))..)))))))).)))).))))).)))...)))))))....))))).

Structure

gu     --cc   a    uuc   a     A    U        --         a       g 
  uguca    guu gucu   acu cgAUG CUUA UGUUGUGU  UACCaaaga aacauaa  
  |||||    ||| ||||   ||| ||||| |||| ||||||||  ||||||||| ||||||| g
  acggu    caa caga   uga gcUAC GAAU ACAACACG  AUgguuucu uuguguu  
-c     aaaa   -    cau   c     C    C        CA         g       c 

Annotation confidence High

Genome context

chr5: 19566960-19567084 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR2939

Mature ath-miR2939-5p

• Accession: MIMAT0053895
• Description: Arabidopsis thaliana ath-miR2939-5p mature miRNA
• Sequence: 27 - AUGACUUAUUGUUGUGUUACC - 47
• Evidence: experimental ; unknown

Mature ath-miR2939-3p

• Accession: MIMAT0014143
• Description: Arabidopsis thaliana ath-miR2939-3p mature miRNA
• Sequence: 79 - UAACGCACAACACUAAGCCAU - 99
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20042113
   MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
   Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
   BMC Genomics (2009) 10:643