Stem-loop aae-mir-993

Accession

MI0013472

Description

Aedes aegypti aae-mir-993 precursor miRNA

Literature search

1 open access papers mention aae-mir-993
(1 sentences)

Sequence

16352 reads, 91.0 reads per million, 75 experiments

agcgcuccuccgugaccUACCCUGUAGUUCCGGGCUUUUgugguuucuuuuauuguuaauuaucaGAAGCUCGUUUCUAUAGAGGUAUCUcacagggugaa
..(((.(((..((((..((((((((((...(((((((((((((((............))))).))))))))))...)))))).))))..))))))))))..

Structure

ag   u   cc    cc    -      UUC          -     ucuuu 
  cgc ccu  guga  UACC CUGUAG   CGGGCUUUUg ugguu     u
  ||| |||  ||||  |||| ||||||   |||||||||| |||||      
  gug gga  cacU  AUGG GAUAUC   GCUCGAAGac auuaa     a
aa   -   --    CU    A      UUU          u     uuguu 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001809864.1|: 256781-256881 [+]

Mature aae-miR-993-5p

• Accession: MIMAT0014266
• Description: Aedes aegypti aae-miR-993-5p mature miRNA
• Sequence: 18 - UACCCUGUAGUUCCGGGCUUUU - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-993-3p

• Accession: MIMAT0057334
• Description: Aedes aegypti aae-miR-993-3p mature miRNA
• Sequence: 66 - GAAGCUCGUUUCUAUAGAGGUAUCU - 90
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119