Stem-loop aae-mir-1000-2

Accession

MI0013503

Description

Aedes aegypti aae-mir-1000-2 precursor miRNA

Gene family

MIPF0000701; mir-1000

Literature search

3 open access papers mention aae-mir-1000-2
(15 sentences)

Sequence

5662 reads, 294 reads per million, 2 experiments

cgauuuuugcuagaaaccgauuAUAUUGUCCUGUCACAGCAGUacuguuacaaauuuacuguuguuucgggacauuuacauugauucuagccgucac
........(((((((..((((.....(((((((..(((((((((............)))))))))..))))))).....)))).)))))))......

Structure

cgauuuuu       ac    uAUAU       UC         cuguu 
        gcuagaa  cgau     UGUCCUG  ACAGCAGUa     a
        |||||||  ||||     |||||||  |||||||||      
        cgaucuu  guua     acagggc  uguugucau     c
--cacugc       -a    cauuu       uu         uuaaa 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.3798: 170-266 [-]

Mature aae-miR-1000

• Accession: MIMAT0014297
• Description: Aedes aegypti aae-miR-1000 mature miRNA
• Sequence: 23 - AUAUUGUCCUGUCACAGCAGU - 43
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119