Stem-loop aae-mir-316

Accession

MI0013523

Description

Aedes aegypti aae-mir-316 precursor miRNA

Literature search

1 open access papers mention aae-mir-316
(1 sentences)

Sequence

229942 reads, 1151.0 reads per million, 83 experiments

ccaacauuuugauugauuUGUCUUUUUCCGCUUACUGCCGguggcauuugaaauucucgACAGCAAACCGAAAAAGGCGCCUcaaucaauu
........((((((((..((((((((((...........(((.((..((((.....))))..))..)))))))))))))..))))))))..

Structure

ccaacauu        uu          CGCUUACUGCC   -g  au    a 
        uugauuga  UGUCUUUUUC           Ggu  gc  uuga a
        ||||||||  ||||||||||           |||  ||  |||| u
        aacuaacU  GCGGAAAAAG           CCA  CG  Agcu u
------uu        CC          -----------   AA  AC    c 

Annotation confidence Medium

Genome context

ref|NW_001811006.1|: 891276-891366 [-]

Mature aae-miR-316-5p

• Accession: MIMAT0014317
• Description: Aedes aegypti aae-miR-316-5p mature miRNA
• Sequence: 19 - UGUCUUUUUCCGCUUACUGCCG - 40
• Evidence: experimental ; 454 [1]

Mature aae-miR-316-3p

• Accession: MIMAT0057365
• Description: Aedes aegypti aae-miR-316-3p mature miRNA
• Sequence: 60 - ACAGCAAACCGAAAAAGGCGCCU - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581