Stem-loop gra-MIR398

Accession

MI0013535

Description

Gossypium raimondii gra-MIR398 precursor miRNA

Literature search

1 open access papers mention gra-MIR398
(3 sentences)

Sequence

13721 reads, 1780.0 reads per million, 13 experiments

gccaagaugguuuacccCAGAGGGGUGCCACCUAAGAacacaggucaucccuuaaccaaauagcuUGUGUUCUCAGGUCACCCCUUugggguacauauaucuucgccauucccuuuuguuugc
((.((((((...(((((((((((((((..((((.(((((((((((.................))))))))))).)))))))))))))))))))....)))))).)).................

Structure

-----------------  c      -guu               CC    A           caucccu 
                 gc aagaug    uacccCAGAGGGGUG  ACCU AGAacacaggu       u
                 || ||||||    |||||||||||||||  |||| |||||||||||       a
                 cg uucuau    augggguUUCCCCAC  UGGA UCUUGUGUucg       a
cguuuguuuucccuuac  c      auac               --    C           auaaacc 

Annotation confidence Medium

Genome context

Unknown

Mature gra-miR398-5p

• Accession: MIMAT0055347
• Description: Gossypium raimondii gra-miR398-5p mature miRNA
• Sequence: 18 - CAGAGGGGUGCCACCUAAGA - 37
• Evidence: experimental ; unknown

Mature gra-miR398-3p

• Accession: MIMAT0014328
• Description: Gossypium raimondii gra-miR398-3p mature miRNA
• Sequence: 66 - UGUGUUCUCAGGUCACCCCUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122