Stem-loop gra-MIR482

Accession

MI0013536

Description

Gossypium raimondii gra-MIR482 precursor miRNA

Literature search

5 open access papers mention gra-MIR482
(106 sentences)

Sequence

27312 reads, 4653.0 reads per million, 13 experiments

gaaggaggaaaaggagagaccguuucuggaaauuuucggaauggAGGAGUUGGAAAGAUUUUGAAUUUucucuguauuuuaauaaugaaaaaUCUUUCCAAUUCCUCCCAUUCCacugauuuccagcacuuccucuccauuuucuuaccuuu
((((((((((((((((((...((..(((((((((...(((((((((((((((((((((((((..(((................)))..)))))))))))))))))).)))))))...))))))))).))...)))))).))))))).)))))

Structure

     -       -      acc  uu         uuc       -                  GA   Uucucug 
gaagg aggaaaa ggagag   gu  cuggaaauu   ggaaugg AGGAGUUGGAAAGAUUUU  AUU       u
||||| ||||||| ||||||   ||  |||||||||   ||||||| ||||||||||||||||||  |||        
uuucc uucuuuu ccucuc   ca  gaccuuuag   CCUUACC UCCUUAACCUUUCUaaaa  uaa       a
     a       a      cuu  -c         uca       C                  ag   uaauuuu 

Annotation confidence Medium

Genome context

chr9: 37350782-37350933 [+]

Mature gra-miR482-5p

• Accession: MIMAT0055348
• Description: Gossypium raimondii gra-miR482-5p mature miRNA
• Sequence: 45 - AGGAGUUGGAAAGAUUUUGAAUUU - 68
• Evidence: experimental ; unknown

Mature gra-miR482-3p

• Accession: MIMAT0014329
• Description: Gossypium raimondii gra-miR482-3p mature miRNA
• Sequence: 93 - UCUUUCCAAUUCCUCCCAUUCC - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122