Stem-loop ghr-MIR164

Accession

MI0013538

Description

Gossypium hirsutum ghr-MIR164 precursor miRNA

Literature search

17 open access papers mention ghr-MIR164
(53 sentences)

Sequence

407976 reads, 10113.0 reads per million, 50 experiments

ggggugaguaucucuuguUGGAGAAGCAGGGCACGUGCAaguuccuauguuuaagugaacuuugCACGUGCUCCCCUUCUCCACCgugaguuucucauucu
((((((((...(((.((.((((((((..((((((((((((((((((.......)).)))).))))))))))))..)))))))).)).)))...))))))))

Structure

        uau   u  u        CA            -    -  au 
ggggugag   cuc ug UGGAGAAG  GGGCACGUGCAa guuc cu  g
||||||||   ||| || ||||||||  |||||||||||| |||| ||  u
ucuuacuc   gag gC ACCUCUUC  CUCGUGCACguu caag ga  u
        uuu   u  C        CC            u    u  au 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR164-5p

• Accession: MIMAT0014331
• Description: Gossypium hirsutum ghr-miR164-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: experimental ; Illumina [1]

Mature ghr-miR164-3p

• Accession: MIMAT0055293
• Description: Gossypium hirsutum ghr-miR164-3p mature miRNA
• Sequence: 65 - CACGUGCUCCCCUUCUCCACC - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122