Stem-loop ghr-MIR167a

Accession

MI0013539

Description

Gossypium hirsutum ghr-MIR167a precursor miRNA

Literature search

22 open access papers mention ghr-MIR167a
(108 sentences)

Sequence

gggaaaaagUGAAGCUGCCAGCAUGAUCUAucuuccguuaguaagaugcggaugcuauauugcuaacccuagcuaggucaugcugcgacagccucacuccuuccu
(((((..(((((.(((((((((((((((((.((...((((((((...((....))....))))))))...)).)))))))))))).).)))).)))))..)))))

Structure

     aa     A    - -            u  ucc        -gau  g 
gggaa  agUGA GCUG C CAGCAUGAUCUA cu   guuaguaa    gc g
|||||  ||||| |||| | |||||||||||| ||   ||||||||    ||  
uccuu  ucacu cgac g gucguacuggau ga   caaucguu    cg a
     cc     c    a c            c  ucc        auau  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR167a

• Accession: MIMAT0014332
• Description: Gossypium hirsutum ghr-miR167a mature miRNA
• Sequence: 10 - UGAAGCUGCCAGCAUGAUCUA - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122