miRBase entry: ghr-MIR172

Stem-loop ghr-MIR172


Accession
MI0013540
Description
Gossypium hirsutum ghr-MIR172 precursor miRNA

Literature search
23 open access papers mention ghr-MIR172
(116 sentences)

Sequence

agucacuguuugcuguuggagcaucaucaagauucacaauuuuaggguucuuuuuugauugauuugaucaaucagccuuuuuaugauugAGAAUCCUGAUGAUGCUGCAGuggcaauaaguggcu
(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))))).))))).)))))))))).)))))))))..)))))))

Structure
       gu         g          a     a     ---uu     ucuuuuu        u 
agucacu  uugcuguug agcaucauca gauuc caauu     agggu       ugauugau  
|||||||  ||||||||| |||||||||| ||||| |||||     |||||       |||||||| u
ucgguga  aacgguGAC UCGUAGUAGU CUAAG guuag     uuccg       acuaacua  
       au         G          C     A     uauuu     -------        g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR172

Accession MIMAT0014333
Description Gossypium hirsutum ghr-miR172 mature miRNA
Sequence 90 - AGAAUCCUGAUGAUGCUGCAG - 110
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19889219
    Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
    Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
    Genome Biol (2009) 10:R122