Stem-loop ghr-MIR172

Accession

MI0013540

Description

Gossypium hirsutum ghr-MIR172 precursor miRNA

Literature search

23 open access papers mention ghr-MIR172
(114 sentences)

Sequence

101468 reads, 5091.0 reads per million, 46 experiments

agucacuguuugcuguuGGAGCAUCAUCAAGAUUCACaauuuuaggguucuuuuuugauugauuugaucaaucagccuuuuuaugauugAGAAUCCUGAUGAUGCUGCAGuggcaauaaguggcu
(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))))).))))).)))))))))).)))))))))..)))))))

Structure

       gu         G          A     A     ---uu     ucuuuuu        u 
agucacu  uugcuguuG AGCAUCAUCA GAUUC Caauu     agggu       ugauugau  
|||||||  ||||||||| |||||||||| ||||| |||||     |||||       |||||||| u
ucgguga  aacgguGAC UCGUAGUAGU CUAAG guuag     uuccg       acuaacua  
       au         G          C     A     uauuu     -------        g 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR172-5p

• Accession: MIMAT0055295
• Description: Gossypium hirsutum ghr-miR172-5p mature miRNA
• Sequence: 18 - GGAGCAUCAUCAAGAUUCAC - 37
• Evidence: experimental ; unknown

Mature ghr-miR172-3p

• Accession: MIMAT0014333
• Description: Gossypium hirsutum ghr-miR172-3p mature miRNA
• Sequence: 90 - AGAAUCCUGAUGAUGCUGCAG - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122