Stem-loop ghr-MIR393

Accession

MI0013541

Description

Gossypium hirsutum ghr-MIR393 precursor miRNA

Literature search

15 open access papers mention ghr-MIR393
(49 sentences)

Sequence

12367 reads, 910.0 reads per million, 50 experiments

gguggagagcUCCAAAGGGAUCGCAUUGAUCUaauguugaugaugggcuuccuugaaaaccuuaacgaauuaauuauugauuuuuguugauucaguucaguacccauuggAUCAUGCGAUCCCUUCGGAAUUuuccauc
(((((((((.(((.((((((((((((.(((((((((....(((.((..(((...)))..)).....((((((((...........))))))))...))).....))))))))))))))))))))).))).)))))))))

Structure

         c   A            U         -uuga   ugggcuuccuugaaaaccuuaac        uauu 
gguggagag UCC AAGGGAUCGCAU GAUCUaaug     uga                       gaauuaau    g
||||||||| ||| |||||||||||| |||||||||     |||                       ||||||||    a
cuaccuuUU AGG UUCCCUAGCGUA CUAgguuac     acu                       cuuaguug    u
         A   C            -         ccaug   --------------------uga        uuuu 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR393-5p

• Accession: MIMAT0014334
• Description: Gossypium hirsutum ghr-miR393-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUCU - 32
• Evidence: experimental ; Illumina [1]

Mature ghr-miR393-3p

• Accession: MIMAT0055296
• Description: Gossypium hirsutum ghr-miR393-3p mature miRNA
• Sequence: 111 - AUCAUGCGAUCCCUUCGGAAUU - 132
• Evidence: experimental ; unknown

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122