Stem-loop ghr-MIR394b

Accession

MI0013542

Description

Gossypium hirsutum ghr-MIR394b precursor miRNA

Literature search

11 open access papers mention ghr-MIR394b
(17 sentences)

Sequence

19501 reads, 1390.0 reads per million, 51 experiments

uagggguucuuagaggcuuuguugcagagccaauUUGGCAUUCUGUCCACCUCCauugauguacuucuucuuaccuacccaacuuauaaaaugauuugucuuugaaguaauGGAGGCGGCCAGUAUGUCAAAUagacucuguaaauuucucucugagaaacccua
(((((..(((((((((.....((((((((.(.(((((((((.(((.((.(((((((.....((((((....................................))))))))))))).)).))).))))))))).).)))))))).....)))))))))..)))))

Structure

     gu         cuuug        c a         U   U  A       ugaug      uucuuaccuacccaacu 
uaggg  ucuuagagg     uugcagag c auUUGGCAU CUG CC CCUCCau     uacuuc                 u
|||||  |||||||||     |||||||| | ||||||||| ||| || |||||||     ||||||                  
auccc  agagucucu     aaugucuc g UAAACUGUA GAC GG GGAGGua     augaag                 a
     aa         cuuua        a a         U   C  C       -----      uuucuguuuaguaaaau 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR394b-5p

• Accession: MIMAT0014335
• Description: Gossypium hirsutum ghr-miR394b-5p mature miRNA
• Sequence: 35 - UUGGCAUUCUGUCCACCUCC - 54
• Evidence: experimental ; Illumina [1]

Mature ghr-miR394b-3p

• Accession: MIMAT0055297
• Description: Gossypium hirsutum ghr-miR394b-3p mature miRNA
• Sequence: 112 - GGAGGCGGCCAGUAUGUCAAAU - 133
• Evidence: experimental ; unknown

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122