Stem-loop ghr-MIR394a

Accession

MI0013543

Description

Gossypium hirsutum ghr-MIR394a precursor miRNA

Literature search

14 open access papers mention ghr-MIR394a
(30 sentences)

Sequence

12252 reads, 945.0 reads per million, 51 experiments

ugcuuucauggggguuuagcaaagggcuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCccaucauggaaaaaguccguauuuuuccccucugguuuuucauggaggugggcauacugccaacugUGCUCUGUUGGCUUCUCUUUGuaaaauccuugugaugca
(((..((((((((((((.((((((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))....)))........)))))))))))...)))))).)).))))))).))...)))))))).)))))))))))).)))

Structure

   uu            a        cuu  u       u  -      UUC           --------   ucau       gu 
ugc  ucauggggguuu gcaaaggg   cu acagagu ua UUGGCA   UGUCCACCUCC        cca    ggaaaaa  c
|||  |||||||||||| ||||||||   || ||||||| || ||||||   |||||||||||        |||    |||||||  c
acg  aguguuccuaaa uGUUUCUC   GG UGUCUCG gu aaccgu   acggguggagg        ggu    ccuuuuu  g
   -u            a        UUC  U       U  c      cau           uacuuuuu   cucc       au 

Annotation confidence Low

Genome context

Unknown

Mature ghr-miR394a-5p

• Accession: MIMAT0014336
• Description: Gossypium hirsutum ghr-miR394a-5p mature miRNA
• Sequence: 43 - UUGGCAUUCUGUCCACCUCC - 62
• Evidence: experimental ; Illumina [1]

Mature ghr-miR394a-3p

• Accession: MIMAT0055298
• Description: Gossypium hirsutum ghr-miR394a-3p mature miRNA
• Sequence: 129 - UGCUCUGUUGGCUUCUCUUUG - 149
• Evidence: experimental ; unknown

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122