Stem-loop ghr-MIR398

Accession

MI0013544

Description

Gossypium hirsutum ghr-MIR398 precursor miRNA

Literature search

10 open access papers mention ghr-MIR398
(46 sentences)

Sequence

1846 reads, 355.0 reads per million, 40 experiments

gccaagaugguuuacccCAGAGGGGUGCCACCUAAGAACAcaggucaucccuuaaccaaauagcuUGUGUUCUCAGGUCACCCCUUugggguacauauaucuucgc
((.((((((...(((((((((((((((..((((.(((((((((((.................))))))))))).)))))))))))))))))))....)))))).))

Structure

  c      -guu               CC    A           caucccu 
gc aagaug    uacccCAGAGGGGUG  ACCU AGAACAcaggu       u
|| ||||||    |||||||||||||||  |||| |||||||||||       a
cg uucuau    augggguUUCCCCAC  UGGA UCUUGUGUucg       a
  c      auac               --    C           auaaacc 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR398-5p

• Accession: MIMAT0055299
• Description: Gossypium hirsutum ghr-miR398-5p mature miRNA
• Sequence: 18 - CAGAGGGGUGCCACCUAAGAACA - 40
• Evidence: experimental ; unknown

Mature ghr-miR398-3p

• Accession: MIMAT0014337
• Description: Gossypium hirsutum ghr-miR398-3p mature miRNA
• Sequence: 66 - UGUGUUCUCAGGUCACCCCUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122