Stem-loop ghr-MIR479

Accession

MI0013545

Description

Gossypium hirsutum ghr-MIR479 precursor miRNA

Literature search

4 open access papers mention ghr-MIR479
(7 sentences)

Sequence

6280 reads, 176.0 reads per million, 45 experiments

ggaggaguagacacgaCGUGAUAUUGGUUCGGCUCAUCuuauugugauuaaaaauuucaaggCGAGCCGAAUCAAUAUCACUcauguaugcuuuuuu
.((((((((.(((.((.((((((((((((((((((.((((...((........))...)))).)))))))))))))))))))).))).)))))))).

Structure

g        g   c  C                  A    auu  gau 
 gaggagua aca ga GUGAUAUUGGUUCGGCUC UCuu   gu   u
 |||||||| ||| || |||||||||||||||||| ||||   ||    
 uuuuucgu ugu cU CACUAUAACUAAGCCGAG ggaa   ua   a
u        a   a  -                  C    cuu  aaa 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR479-5p

• Accession: MIMAT0014338
• Description: Gossypium hirsutum ghr-miR479-5p mature miRNA
• Sequence: 17 - CGUGAUAUUGGUUCGGCUCAUC - 38
• Evidence: experimental ; Illumina [1]

Mature ghr-miR479-3p

• Accession: MIMAT0055300
• Description: Gossypium hirsutum ghr-miR479-3p mature miRNA
• Sequence: 63 - CGAGCCGAAUCAAUAUCACU - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122