Stem-loop ghr-MIR482a

Accession

MI0013546

Description

Gossypium hirsutum ghr-MIR482a precursor miRNA

Literature search

20 open access papers mention ghr-MIR482a
(159 sentences)

Sequence

23413 reads, 3083.0 reads per million, 51 experiments

auuguuaaagagggaaagggagaaagaguugccgggaguuuauggAAGUGGGAUGGGUGGAAAGAUUuguauuuucucucuugaguuucuaagaauguaaagcaaaUCUUUCCUACUCCUCCCAUACCacuuauuuccaguucuuccucuccacuucuuacuuuucucgau
((((..((((.(((((..(((((..(((..((.((((((...(((..((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).)))))).)))...)))))).)).)))..)))))..))))).))))...))))

Structure

    -uu    a     ag     aa   uu  c      uua   AA      U    -            a   u uc     ag 
auug   aaag gggaa  ggaga  gag  gc gggagu   ugg  GUGGGA GGGU GGAAAGAUUugu uuu c  ucuug  u
||||   |||| |||||  |||||  |||  || ||||||   |||  |||||| |||| |||||||||||| ||| |  |||||   
uagc   uuuc uucuu  ccucu  uuc  ug ccuuua   aCC  UACCCU CUCA CCUUUCUaaacg aaa g  agaau  u
    ucu    a     ca     cc   -u  a      uuc   -A      C    U            -   u ua     cu 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR482a-5p

• Accession: MIMAT0055301
• Description: Gossypium hirsutum ghr-miR482a-5p mature miRNA
• Sequence: 46 - AAGUGGGAUGGGUGGAAAGAUU - 67
• Evidence: experimental ; unknown

Mature ghr-miR482a-3p

• Accession: MIMAT0014339
• Description: Gossypium hirsutum ghr-miR482a-3p mature miRNA
• Sequence: 107 - UCUUUCCUACUCCUCCCAUACC - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122