Stem-loop ghr-MIR827a

Accession

MI0013548

Description

Gossypium hirsutum ghr-MIR827a precursor miRNA

Literature search

9 open access papers mention ghr-MIR827a
(12 sentences)

Sequence

30318 reads, 7773.0 reads per million, 44 experiments

augcauuguugaaugugUUUGUUUAUGGUCAUCUAAGCcauuuuucaucucgccaauucuuuguucaagcaguuuuuggauaaucgaaccgauagacuacacccgcagaaaugauguUUAGAUGACCAUCAACAAACAacuucaucuuauugcau
(((((..(.((((..((((((((.((((((((((((((((((((((......((((....((((....))))...))))...((((...))))...........).)))))))..)))))))))))))).))))))))..)))).)....)))))

Structure

     --uu u    ug        U              --       - -------------------aucucg    uucu    u 
augca    g ugaa  ugUUUGUU AUGGUCAUCUAAGC  cauuuuu c                         ccaa    uugu c
|||||    | ||||  |||||||| ||||||||||||||  ||||||| |                         ||||    ||||  
uacgu    c acuu  ACAAACAA UACCAGUAGAUUug  guaaaga g                         gguu    gacg a
     uauu u    ca        C              ua       c cccacaucagauagccaagcuaaua    -uuu    a 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR827a-5p

• Accession: MIMAT0055303
• Description: Gossypium hirsutum ghr-miR827a-5p mature miRNA
• Sequence: 18 - UUUGUUUAUGGUCAUCUAAGC - 38
• Evidence: experimental ; unknown

Mature ghr-miR827a-3p

• Accession: MIMAT0014341
• Description: Gossypium hirsutum ghr-miR827a-3p mature miRNA
• Sequence: 118 - UUAGAUGACCAUCAACAAACA - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122