Stem-loop ghr-MIR827b

Accession

MI0013549

Description

Gossypium hirsutum ghr-MIR827b precursor miRNA

Literature search

8 open access papers mention ghr-MIR827b
(10 sentences)

Sequence

30318 reads, 7773.0 reads per million, 44 experiments

cuuuuucuuuucaugaaaaugcauuauugaaugugUUUGUUUAUGGUCAUCUAAGCcauuuuucaucucgccaauucuuuguucaagcaguuuuuggauaaucgaaccgauagaauacacccgcagaaaugauguUUAGAUGACCAUCAACAAACAacuucaucuuauugcaucaaguguucaagauuuaag
.....((((..(((....(((((.((.((((..((((((((.(((((((((((((((((((((..........((((((((((((((.....)))))))))..........)))))........)))))))..)))))))))))))).))))))))..))))...)).)))))...)))...))))......

Structure

-cuuuu    -uu   gaaa     u  --u    ug        U              --       caucucgcca     ----------         c 
      ucuu   cau    augca ua   ugaa  ugUUUGUU AUGGUCAUCUAAGC  cauuuuu          auucu          uuguucaag a
      ||||   |||    ||||| ||   ||||  |||||||| ||||||||||||||  |||||||          |||||          ||||||||| g
      agaa   gug    uacgu au   acuu  ACAAACAA UACCAGUAGAUUug  guaaaga          uaaga          aauagguuu u
gaauuu    cuu   -aac     u  ucu    ca        C              ua       --cgcccaca     uagccaagcu         u 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR827b-5p

• Accession: MIMAT0055304
• Description: Gossypium hirsutum ghr-miR827b-5p mature miRNA
• Sequence: 36 - UUUGUUUAUGGUCAUCUAAGC - 56
• Evidence: experimental ; unknown

Mature ghr-miR827b-3p

• Accession: MIMAT0014342
• Description: Gossypium hirsutum ghr-miR827b-3p mature miRNA
• Sequence: 136 - UUAGAUGACCAUCAACAAACA - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122