Stem-loop ghr-MIR2948

Accession

MI0013551

Description

Gossypium hirsutum ghr-MIR2948 precursor miRNA

Literature search

7 open access papers mention ghr-MIR2948
(22 sentences)

Sequence

150382 reads, 18686.0 reads per million, 51 experiments

guaagagaaagggagagagugguguugggaguuggaggUGUGGGAGAGUUGGGCAAGAAUUaugaccuuuguucaauccaaaggggcaauUCUUACCAACCCCUCCCAUACCcuugauuuccaaccguugcuccccuucccugccuuggauc
((..(((..((((((.((((((.((((((((((((.((((((((((.(((((..(((((((....((((((.......))))))...))))))).)))))..)))))))))).))))))))))))..))))))...))))))..)))..)).

Structure

-  aa   aa      --a      -u            a          -A     GC       auga      uu 
 gu  gag  agggag   gagugg  guugggaguugg ggUGUGGGAG  GUUGG  AAGAAUU    ccuuug  c
 ||  |||  ||||||   ||||||  |||||||||||| ||||||||||  |||||  |||||||    ||||||  a
 ua  uuc  ucccuu   cucguu  caaccuuuaguu CCAUACCCUC  CAACC  UUCUuaa    ggaaac  a
c  gg   cg      ccc      gc            c          CC     -A       -cgg      cu 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR2948-5p

• Accession: MIMAT0014344
• Description: Gossypium hirsutum ghr-miR2948-5p mature miRNA
• Sequence: 39 - UGUGGGAGAGUUGGGCAAGAAUU - 61
• Evidence: experimental ; Illumina [1]

Mature ghr-miR2948-3p

• Accession: MIMAT0055306
• Description: Gossypium hirsutum ghr-miR2948-3p mature miRNA
• Sequence: 91 - UCUUACCAACCCCUCCCAUACC - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122