Stem-loop ghr-MIR2949b

Accession

MI0013553

Description

Gossypium hirsutum ghr-MIR2949b precursor miRNA

Literature search

6 open access papers mention ghr-MIR2949b
(15 sentences)

Sequence

22342 reads, 1252.0 reads per million, 51 experiments

caugaugcugcucaguauuuuaauacuggucuuacugucuuaguuugcgucuugUCUUUUGAACUGGAUUUGCCGAcuugaacugcguuguugaagguuuacaaaacccgagccUGCAAAUCCAGUCAAAAGUUAaaccgggcugagauuuacgaaucugauauauauugggagguauuaug
(((((((((.((((((((....((((.(((......(((((((((((.((.(((.(((((((.((((((((((.(.(((((((......)))...(((((...))))))))).).))))))))))))))))).))))))))))))))))......))).).))))))))))).)))))))))

Structure

         g        uuua   - u   cuuacu           c  c   U       A          C A    aacugcguuguugaa     a 
caugaugcu cucaguau    aua c ggu      gucuuaguuug gu uug CUUUUGA CUGGAUUUGC G cuug               gguuu  
||||||||| ||||||||    ||| | |||      ||||||||||| || ||| ||||||| |||||||||| | ||||               ||||| c
guauuaugg ggguuaua    uau g cua      uagagucgggc ca aAU GAAAACU GACCUAAACG c gagc               ccaaa  
         a        ----   a u   agcauu           -  -   U       -          U c    ---------------     a 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR2949b-5p

• Accession: MIMAT0014346
• Description: Gossypium hirsutum ghr-miR2949b-5p mature miRNA
• Sequence: 55 - UCUUUUGAACUGGAUUUGCCGA - 76
• Evidence: experimental ; Illumina [1]

Mature ghr-miR2949b-3p

• Accession: MIMAT0055307
• Description: Gossypium hirsutum ghr-miR2949b-3p mature miRNA
• Sequence: 115 - UGCAAAUCCAGUCAAAAGUUA - 135
• Evidence: experimental ; unknown

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122