Stem-loop ghr-MIR2950

Accession

MI0013555

Description

Gossypium hirsutum ghr-MIR2950 precursor miRNA

Literature search

9 open access papers mention ghr-MIR2950
(23 sentences)

Sequence

46286 reads, 2203.0 reads per million, 50 experiments

cauggguuuauguuauaUUCCAUCUCUUGCACACUGGAcuagccagcuuuuuguuggcuucagcuucagguUGGUGUGCAGGGGGUGGAAUAcaucauugauaucaug
((((((((.(((...(((((((((((((((((((..(((((((((((.....))))))).........)))).)))))))))))))))))))...))).))).)))))

Structure

     -   u   uua                   UG    ---------       u 
caugg guu aug   uaUUCCAUCUCUUGCACAC  GAcu         agccagc u
||||| ||| |||   |||||||||||||||||||  ||||         ||||||| u
guacu uag uac   AUAAGGUGGGGGACGUGUG  Uugg         ucgguug u
     a   u   uac                   -G    acuucgacu       u 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR2950-5p

• Accession: MIMAT0055309
• Description: Gossypium hirsutum ghr-miR2950-5p mature miRNA
• Sequence: 18 - UUCCAUCUCUUGCACACUGGA - 38
• Evidence: experimental ; unknown

Mature ghr-miR2950-3p

• Accession: MIMAT0014348
• Description: Gossypium hirsutum ghr-miR2950-3p mature miRNA
• Sequence: 72 - UGGUGUGCAGGGGGUGGAAUA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122