miRBase entry: ghr-MIR399c

Stem-loop ghr-MIR399c


Accession
MI0013556
Description
Gossypium hirsutum ghr-MIR399c precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
13 open access papers mention ghr-MIR399c
(35 sentences)

Sequence

agggcuucucugcauuggcagguagaugauaacuccacaucauguaguuaaccUGCCAAAGGAGAGUUGGCCUU
.(((((.((((.(.((((((((((.(((((........))))).).....))))))))).).))))..))))).

Structure
a     -u    g a         ----- g     aac 
 gggcu  cucu c uuggcaggu     a augau   u
 |||||  |||| | |||||||||     | |||||    
 UCCGG  GAGA G AACCGUcca     u uacua   c
U     UU    G A         auuga g     cac 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ghr-miR399c

Accession MIMAT0014349
Description Gossypium hirsutum ghr-miR399c mature miRNA
Sequence 54 - UGCCAAAGGAGAGUUGGCCUU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19889219
    Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
    Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
    Genome Biol (2009) 10:R122