Stem-loop ghr-MIR399d

Accession

MI0013557

Description

Gossypium hirsutum ghr-MIR399d precursor miRNA

Literature search

13 open access papers mention ghr-MIR399d
(38 sentences)

Sequence

2730 reads, 106.0 reads per million, 49 experiments

ugaggaauuacagggcaacucuccuuaagcaaaaauggaugugcuuuucuuugcauaauucgauuuUGCCAAAGGAGAUUUGCCCUGccauucacuca
((((((((..((((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))))..)))).))))

Structure

    -    ua        c       aa      a     -    uuu 
ugag gaau  cagggcaa ucuccuu  gcaaaa uggau gugc   u
|||| ||||  |||||||| |||||||  |||||| ||||| ||||    
acuc cuua  GUCCCGUU AGAGGAA  CGUuuu gcuua uacg   c
    a    cc        U       AC      a     a    uuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR399d-3p

• Accession: MIMAT0014350
• Description: Gossypium hirsutum ghr-miR399d-3p mature miRNA
• Sequence: 67 - UGCCAAAGGAGAUUUGCCCUG - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122